Massachusetts Institute of Technology (mit)
Computer Science and Artificial Intelligence Laboratory (csail)
Theory of Computation Group (toc)
Berger Lab for Computation and Biology (compbio)

Corresponding author for study:,, and
Queries regarding usage of TransposeNet pipeline:,, and


TransposeNet Pipeline


The TransposeNet framework is explained in the following study:

Khurana V†, Peng J†, Chung CY†, Auluck PK, Tardiff DF, Fanning S, Bartels T, Koeva M, Eichhorn SW, Benyamini H, Lou Y, Nutter-Upham A, Baru V, Freyzon Y, Tuncbag N, Costanzo M, San Luis BJ, Schöndorf DC, Barrasa MI, Ehsani S, Sanjana N, Zhong Q, Gasser T, Bartel DP, Vidal M, Deleidi M, Boone C, Fraenkel E*, Berger B*, and Lindquist S*. Genome-scale networks link diverse molecular pathways and neurodegenerative disease genes to alpha-synuclein. (to appear in Cell Systems)

† = joint first authors
* = co-corresponding authors


This section is under construction.

  1. Run DCA tool for human homologs
  2. Build SteinerNet ensemble.


This section is under construction.